Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921454.1_cds_XP_016470405.1_62856
CDS Infomation

[gene=LOC107792682] [db_xref=GeneID:107792682] [protein=probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic] [protein_id=XP_016470405.1] [location=join(11815..12996,14814..15137,15871..16230)] [gbkey=CDS]
Sequence

ATGGCATCTTTTCCTCTTGTTTCAAATGACTGCTTATTAGTTTCTCACAAGAAATGGCAG
CCCCATATTGGAAAGTTTGAACCTTTAAGTAGATTCAAGAATCAAACTTGCTCATTATCC
AATTCTTGTTTTACCTCAAGTTGCGTGCCTTTGTTGGGGTTGAATTATAGATTGTATAAA
TCTCAATGTAATTACAAGAAATGGATGCTCCATTTTGGAAATTTTGAACCTTTAAAGAGA
TTCAAGAATCTATCTTGCTCATTTTCCAATTCTTGTTTTGGGTTGAATTATAGGTTCTGT
AAATCTCAGAGTAGAGTACTACTTTGTAGTACTGGGGTTAGGTCACTGGTAAATGAGAAG
GGAGATATAGAAACCCATTTGAACAAAACAGAAAGTAATGATATTCGTAGGAAGTTTTCG
TTGAGATTGAGACCAAGGCTAAGATTATTGTCAAGAAGGTTGAAAAGGGTGTCTGTTAAA
TCTATGTTAAATGATTTTGGCAAGTTTTTGAGGAAGAATACAAGAAGAGTGACACTGTCA
ACTTCAATCTCAGTGGTATTGGGCTTGTGCTATTTGTTTCTAAGATTGACAGCAACTCCT
TCTCCAAAGGTTGTTCCATATTCAGACTTGATTACTAGTCTTCAGGGAGGGACTGTAACT
AAGGTTCAATTTGAGGAAGGCACGCGGCGTATTTACTACAATACAAACTTCAGTTGTCTT
AAGAATGTTCAGGCAGGTGAAGCTAGTTCTTTAGTTCCTGCTGAAAGCGCGGCTGTTCAG
ACAGGTGAAGATAGTTCCTTAGTTCGTGCTGAAAGCGCGGTGATAATTGGGGAAAGCAAA
GATATGGATAGCAACAAAGGTGGCAGGAGTAAAATGTCAAAAGCCCAACCTGTATGGCAG
TTTTCGACGAGGAAGATTGATCATGATGAAGGATATCTTCTCAGTCTAATGAGGGAAAAG
GGAACAGCATATGGATCAGCCCCTCAATCAGCACTTATGTCGATTAGGAGCTTATTGATT
ACTATCTTAACTTTATGGATTCCTTTGACTCCTTTAATGTGGCTTCTCTATCGTCAACTT
TCTGCTGCCAATAGTCCTGCAAAAAAACGAAAGCCAAGTAACCAGGTGGTTGGCTTTAAT
GATGTCGAGGGTGTCGATGCTGCAAAAGTCGAACTTATGGAGGTAGTATTGTGTCTGCAA
GGAGCTATAAACTTCAGTAAATTAGGGGCGAAGTTACCAAGAGGTGTACTGCTTGTAGGT
CCACCTGGCACAGGAAAAACGTTACTAGCTCGTGCAGTGGCAGGAGAAGCAGGACTACCC
TTTTTTTCCGTTTCTGCTAGTGAGTTTGTTGAAATGTTTGTTGGAAGAGGAGCAGCTCGC
ATTAGAGACCTTTTTAGCGTAGCAAGAAAGAATGCTCCGTCAATCATTTTCATCGATGAA
CTTGATGCTGTTGGAGGAAAGCGCGGCAGGAGTTTCAATGATGAAAGAGACCAAACTTTG
AATCAGTTGCTTACGGAGATGGATGGCTTTGACTCAGACTTGAACATCATTGTAATTGCT
GCAACTAATAGACCAGAAGCTCTGGATCCAGCTTTATGTCGGCCTGGACGTTTCTCCAGG
AAAATTTTAGTCGGTGAACCAGATGAAGATGGAAGGAGAAAGATCCTGGCCGTACACTTA
AGAGGAGTGCCCCTTGAGGAAGACCTGGAGCTTGTGTGTGACCTGGTTGCATCTCTTACT
CAAGGCTTTGTAGGTGCTGACCTTGCTAACATTGTCAACGAAGCTGCTTTACTAGCTGCA
CGCAGAGGTAAGATTTATACATATTGCACTTATTACCACTGTTTCATTGCATTCAAAAAT
GCTTAG

Peptide Sequence

PEP ID

XP_016470405.1
PEP Infomation

PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Nicotiana tabacum]
Sequence

MASFPLVSNDCLLVSHKKWQPHIGKFEPLSRFKNQTCSLSNSCFTSSCVPLLGLNYRLYK
SQCNYKKWMLHFGNFEPLKRFKNLSCSFSNSCFGLNYRFCKSQSRVLLCSTGVRSLVNEK
GDIETHLNKTESNDIRRKFSLRLRPRLRLLSRRLKRVSVKSMLNDFGKFLRKNTRRVTLS
TSISVVLGLCYLFLRLTATPSPKVVPYSDLITSLQGGTVTKVQFEEGTRRIYYNTNFSCL
KNVQAGEASSLVPAESAAVQTGEDSSLVRAESAVIIGESKDMDSNKGGRSKMSKAQPVWQ
FSTRKIDHDEGYLLSLMREKGTAYGSAPQSALMSIRSLLITILTLWIPLTPLMWLLYRQL
SAANSPAKKRKPSNQVVGFNDVEGVDAAKVELMEVVLCLQGAINFSKLGAKLPRGVLLVG
PPGTGKTLLARAVAGEAGLPFFSVSASEFVEMFVGRGAARIRDLFSVARKNAPSIIFIDE
LDAVGGKRGRSFNDERDQTLNQLLTEMDGFDSDLNIIVIAATNRPEALDPALCRPGRFSR
KILVGEPDEDGRRKILAVHLRGVPLEEDLELVCDLVASLTQGFVGADLANIVNEAALLAA
RRGKIYTYCTYYHCFIAFKNA

Transcript Sequence

Gene sequence data has not been registered.